NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,168.9 |
| Mean read quality |
12.3 |
| Median read length |
2,155.0 |
| Median read quality |
13.6 |
| Number of reads |
44,684.0 |
| Read length N50 |
2,463.0 |
| STDEV read length |
915.5 |
| Total bases |
96,916,975.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
44684 (100.0%) 96.9Mb |
| >Q7 |
44684 (100.0%) 96.9Mb |
| >Q10 |
41410 (92.7%) 91.4Mb |
| >Q12 |
34258 (76.7%) 77.7Mb |
| >Q15 |
7374 (16.5%) 18.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.9 (2804) |
| 2 |
17.8 (3404) |
| 3 |
17.8 (2116) |
| 4 |
17.7 (2764) |
| 5 |
17.7 (2799) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11628 (13.5) |
| 2 |
8978 (13.3) |
| 3 |
8690 (11.2) |
| 4 |
8473 (11.3) |
| 5 |
8389 (15.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot