NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,844.6 |
| Mean read quality |
11.7 |
| Median read length |
2,836.5 |
| Median read quality |
13.1 |
| Number of reads |
4,786.0 |
| Read length N50 |
3,311.0 |
| STDEV read length |
1,197.8 |
| Total bases |
13,614,252.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4786 (100.0%) 13.6Mb |
| >Q7 |
4786 (100.0%) 13.6Mb |
| >Q10 |
4255 (88.9%) 12.6Mb |
| >Q12 |
3348 (70.0%) 10.1Mb |
| >Q15 |
259 (5.4%) 0.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (2400) |
| 2 |
16.6 (2332) |
| 3 |
16.4 (3453) |
| 4 |
16.4 (2918) |
| 5 |
16.3 (2233) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9575 (9.1) |
| 2 |
9037 (13.8) |
| 3 |
9035 (11.8) |
| 4 |
7624 (13.9) |
| 5 |
7499 (13.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot