NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,033.5 |
| Mean read quality |
11.4 |
| Median read length |
3,134.0 |
| Median read quality |
12.6 |
| Number of reads |
1,413.0 |
| Read length N50 |
3,597.0 |
| STDEV read length |
1,411.7 |
| Total bases |
4,286,272.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1413 (100.0%) 4.3Mb |
| >Q7 |
1413 (100.0%) 4.3Mb |
| >Q10 |
1242 (87.9%) 3.9Mb |
| >Q12 |
900 (63.7%) 3.0Mb |
| >Q15 |
7 (0.5%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.8 (3983) |
| 2 |
15.6 (5328) |
| 3 |
15.4 (2710) |
| 4 |
15.1 (3333) |
| 5 |
15.1 (3370) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9878 (13.1) |
| 2 |
9845 (10.9) |
| 3 |
9406 (13.6) |
| 4 |
8842 (12.6) |
| 5 |
8385 (13.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot