NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,522.8 |
| Mean read quality |
12.0 |
| Median read length |
2,494.5 |
| Median read quality |
13.2 |
| Number of reads |
75,866.0 |
| Read length N50 |
2,689.0 |
| STDEV read length |
785.1 |
| Total bases |
191,392,685.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
75866 (100.0%) 191.4Mb |
| >Q7 |
75866 (100.0%) 191.4Mb |
| >Q10 |
69821 (92.0%) 176.5Mb |
| >Q12 |
56291 (74.2%) 143.9Mb |
| >Q15 |
3618 (4.8%) 9.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (3061) |
| 2 |
16.8 (1595) |
| 3 |
16.8 (2738) |
| 4 |
16.7 (529) |
| 5 |
16.7 (2711) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10626 (8.8) |
| 2 |
10469 (9.0) |
| 3 |
9723 (14.1) |
| 4 |
9568 (14.5) |
| 5 |
8674 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot