NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,750.3 |
| Mean read quality |
11.8 |
| Median read length |
2,696.5 |
| Median read quality |
12.9 |
| Number of reads |
38,708.0 |
| Read length N50 |
2,946.0 |
| STDEV read length |
891.2 |
| Total bases |
106,459,357.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
38708 (100.0%) 106.5Mb |
| >Q7 |
38708 (100.0%) 106.5Mb |
| >Q10 |
35836 (92.6%) 99.4Mb |
| >Q12 |
28142 (72.7%) 79.1Mb |
| >Q15 |
593 (1.5%) 1.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (2121) |
| 2 |
16.6 (2715) |
| 3 |
16.6 (2547) |
| 4 |
16.5 (2652) |
| 5 |
16.4 (3251) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11135 (11.0) |
| 2 |
9542 (12.6) |
| 3 |
9346 (13.8) |
| 4 |
9005 (13.1) |
| 5 |
8931 (9.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot