NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,515.7 |
| Mean read quality |
12.5 |
| Median read length |
3,362.0 |
| Median read quality |
13.8 |
| Number of reads |
10,371.0 |
| Read length N50 |
3,838.0 |
| STDEV read length |
1,312.2 |
| Total bases |
36,461,028.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
10371 (100.0%) 36.5Mb |
| >Q7 |
10371 (100.0%) 36.5Mb |
| >Q10 |
9765 (94.2%) 34.7Mb |
| >Q12 |
8323 (80.3%) 29.9Mb |
| >Q15 |
1807 (17.4%) 6.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.7 (2600) |
| 2 |
17.3 (3120) |
| 3 |
17.2 (2401) |
| 4 |
17.1 (5134) |
| 5 |
17.1 (2372) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9597 (14.9) |
| 2 |
8871 (8.2) |
| 3 |
8789 (12.9) |
| 4 |
8766 (13.4) |
| 5 |
8691 (13.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot