NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,536.0 |
| Mean read quality |
12.3 |
| Median read length |
3,401.0 |
| Median read quality |
13.5 |
| Number of reads |
22,776.0 |
| Read length N50 |
3,895.0 |
| STDEV read length |
1,354.0 |
| Total bases |
80,535,448.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
22776 (100.0%) 80.5Mb |
| >Q7 |
22776 (100.0%) 80.5Mb |
| >Q10 |
21291 (93.5%) 75.8Mb |
| >Q12 |
17646 (77.5%) 63.7Mb |
| >Q15 |
2990 (13.1%) 11.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.4 (4050) |
| 2 |
17.4 (5022) |
| 3 |
17.4 (2608) |
| 4 |
17.3 (3295) |
| 5 |
17.3 (2495) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
15341 (13.9) |
| 2 |
14208 (14.3) |
| 3 |
13779 (8.1) |
| 4 |
11098 (10.0) |
| 5 |
10979 (9.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot