NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,394.2 |
| Mean read quality |
10.8 |
| Median read length |
2,401.0 |
| Median read quality |
11.9 |
| Number of reads |
1,905.0 |
| Read length N50 |
2,719.0 |
| STDEV read length |
1,016.9 |
| Total bases |
4,560,979.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1905 (100.0%) 4.6Mb |
| >Q7 |
1905 (100.0%) 4.6Mb |
| >Q10 |
1623 (85.2%) 4.0Mb |
| >Q12 |
871 (45.7%) 2.3Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.5 (2569) |
| 2 |
14.5 (4262) |
| 3 |
14.4 (2156) |
| 4 |
14.0 (1058) |
| 5 |
14.0 (2936) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8851 (8.2) |
| 2 |
7038 (9.4) |
| 3 |
6223 (11.6) |
| 4 |
5996 (12.2) |
| 5 |
5978 (13.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot