NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,647.9 |
| Mean read quality |
12.5 |
| Median read length |
2,648.0 |
| Median read quality |
13.8 |
| Number of reads |
43,692.0 |
| Read length N50 |
2,877.0 |
| STDEV read length |
789.6 |
| Total bases |
115,690,377.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
43692 (100.0%) 115.7Mb |
| >Q7 |
43692 (100.0%) 115.7Mb |
| >Q10 |
41073 (94.0%) 109.3Mb |
| >Q12 |
34783 (79.6%) 93.5Mb |
| >Q15 |
8399 (19.2%) 23.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.0 (2276) |
| 2 |
17.8 (2924) |
| 3 |
17.8 (2328) |
| 4 |
17.8 (1988) |
| 5 |
17.7 (3538) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9498 (13.1) |
| 2 |
9004 (16.0) |
| 3 |
8638 (12.8) |
| 4 |
8452 (11.9) |
| 5 |
8151 (10.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot