NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,351.2 |
| Mean read quality |
11.6 |
| Median read length |
2,335.0 |
| Median read quality |
12.8 |
| Number of reads |
75,758.0 |
| Read length N50 |
2,571.0 |
| STDEV read length |
843.2 |
| Total bases |
178,121,383.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
75758 (100.0%) 178.1Mb |
| >Q7 |
75758 (100.0%) 178.1Mb |
| >Q10 |
68184 (90.0%) 160.9Mb |
| >Q12 |
51392 (67.8%) 123.3Mb |
| >Q15 |
1831 (2.4%) 4.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.5 (1666) |
| 2 |
16.9 (3219) |
| 3 |
16.6 (1969) |
| 4 |
16.5 (2829) |
| 5 |
16.5 (3074) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13028 (8.9) |
| 2 |
10243 (10.1) |
| 3 |
9652 (8.6) |
| 4 |
9204 (13.8) |
| 5 |
9050 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot