NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,356.5 |
| Mean read quality |
11.7 |
| Median read length |
2,337.0 |
| Median read quality |
12.9 |
| Number of reads |
35,912.0 |
| Read length N50 |
2,561.0 |
| STDEV read length |
811.8 |
| Total bases |
84,628,009.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
35912 (100.0%) 84.6Mb |
| >Q7 |
35912 (100.0%) 84.6Mb |
| >Q10 |
32386 (90.2%) 76.7Mb |
| >Q12 |
24528 (68.3%) 59.2Mb |
| >Q15 |
1053 (2.9%) 2.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (1858) |
| 2 |
16.9 (2444) |
| 3 |
16.9 (3641) |
| 4 |
16.9 (412) |
| 5 |
16.6 (2279) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11701 (9.5) |
| 2 |
9619 (12.0) |
| 3 |
9526 (9.5) |
| 4 |
8814 (8.8) |
| 5 |
8782 (9.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot