NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,246.8 |
| Mean read quality |
9.9 |
| Median read length |
647.0 |
| Median read quality |
10.6 |
| Number of reads |
1,425.0 |
| Read length N50 |
2,215.0 |
| STDEV read length |
1,095.5 |
| Total bases |
1,776,758.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1425 (100.0%) 1.8Mb |
| >Q7 |
1425 (100.0%) 1.8Mb |
| >Q10 |
845 (59.3%) 1.5Mb |
| >Q12 |
486 (34.1%) 1.0Mb |
| >Q15 |
17 (1.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (2318) |
| 2 |
15.8 (2638) |
| 3 |
15.5 (1701) |
| 4 |
15.4 (1410) |
| 5 |
15.4 (1741) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6391 (11.0) |
| 2 |
5688 (12.2) |
| 3 |
5100 (13.3) |
| 4 |
5000 (12.2) |
| 5 |
4921 (9.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot