NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,810.7 |
| Mean read quality |
11.9 |
| Median read length |
2,787.0 |
| Median read quality |
13.1 |
| Number of reads |
145,915.0 |
| Read length N50 |
3,056.0 |
| STDEV read length |
997.8 |
| Total bases |
410,127,131.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
145915 (100.0%) 410.1Mb |
| >Q7 |
145915 (100.0%) 410.1Mb |
| >Q10 |
133254 (91.3%) 377.3Mb |
| >Q12 |
105953 (72.6%) 305.2Mb |
| >Q15 |
5852 (4.0%) 17.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (1873) |
| 2 |
17.0 (2119) |
| 3 |
16.9 (1641) |
| 4 |
16.9 (2331) |
| 5 |
16.8 (3008) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14484 (15.1) |
| 2 |
11479 (13.7) |
| 3 |
11329 (9.5) |
| 4 |
11213 (9.0) |
| 5 |
10988 (12.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot