NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,132.0 |
| Mean read quality |
6.0 |
| Median read length |
548.0 |
| Median read quality |
7.0 |
| Number of reads |
3,343,017.0 |
| Read length N50 |
2,583.0 |
| STDEV read length |
1,638.5 |
| Total bases |
3,784,370,511.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2671571 (79.9%) 3058.4Mb |
| >Q7 |
1645558 (49.2%) 1911.7Mb |
| >Q10 |
266369 (8.0%) 205.4Mb |
| >Q12 |
85589 (2.6%) 55.3Mb |
| >Q15 |
15338 (0.5%) 1.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.0 (17) |
| 2 |
27.8 (16) |
| 3 |
27.6 (17) |
| 4 |
27.5 (16) |
| 5 |
27.5 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
131120 (3.8) |
| 2 |
101807 (4.0) |
| 3 |
92226 (3.2) |
| 4 |
90451 (5.3) |
| 5 |
70962 (5.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot