NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,506.1 |
| Mean read quality |
4.7 |
| Median read length |
496.0 |
| Median read quality |
5.5 |
| Number of reads |
1,668,384.0 |
| Read length N50 |
4,470.0 |
| STDEV read length |
2,335.6 |
| Total bases |
2,512,700,545.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
997942 (59.8%) 1974.0Mb |
| >Q7 |
440512 (26.4%) 1089.4Mb |
| >Q10 |
18194 (1.1%) 46.1Mb |
| >Q12 |
263 (0.0%) 0.0Mb |
| >Q15 |
33 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.8 (16) |
| 2 |
19.5 (19) |
| 3 |
18.4 (16) |
| 4 |
17.3 (16) |
| 5 |
17.2 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
79069 (4.0) |
| 2 |
75439 (5.9) |
| 3 |
48562 (6.0) |
| 4 |
46662 (4.4) |
| 5 |
42685 (3.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot