NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,454.4 |
| Mean read quality |
6.2 |
| Median read length |
1,008.0 |
| Median read quality |
7.2 |
| Number of reads |
4,801,709.0 |
| Read length N50 |
2,015.0 |
| STDEV read length |
2,585.6 |
| Total bases |
6,983,583,753.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4142275 (86.3%) 5533.4Mb |
| >Q7 |
2576751 (53.7%) 3614.6Mb |
| >Q10 |
157577 (3.3%) 233.2Mb |
| >Q12 |
47065 (1.0%) 71.4Mb |
| >Q15 |
888 (0.0%) 1.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.9 (394) |
| 2 |
17.3 (506) |
| 3 |
17.1 (654) |
| 4 |
17.1 (662) |
| 5 |
17.0 (567) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
879081 (4.1) |
| 2 |
879081 (4.1) |
| 3 |
786543 (4.0) |
| 4 |
786543 (4.0) |
| 5 |
559061 (3.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot