NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
880.6 |
| Mean read quality |
10.3 |
| Median read length |
572.0 |
| Median read quality |
11.7 |
| Number of reads |
3,171,228.0 |
| Read length N50 |
1,089.0 |
| STDEV read length |
1,752.1 |
| Total bases |
2,792,536,132.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3165254 (99.8%) 2788.1Mb |
| >Q7 |
3032480 (95.6%) 2361.2Mb |
| >Q10 |
2362715 (74.5%) 1665.2Mb |
| >Q12 |
1410939 (44.5%) 1033.6Mb |
| >Q15 |
195484 (6.2%) 134.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
35.2 (16) |
| 2 |
34.5 (16) |
| 3 |
32.7 (16) |
| 4 |
32.2 (16) |
| 5 |
31.4 (22) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
268902 (6.9) |
| 2 |
258998 (7.6) |
| 3 |
241260 (6.5) |
| 4 |
239856 (7.4) |
| 5 |
233319 (7.9) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
880.6 |
| Mean read quality |
10.3 |
| Median read length |
572.0 |
| Median read quality |
11.7 |
| Number of reads |
3,171,222.0 |
| Read length N50 |
1,089.0 |
| STDEV read length |
1,752.1 |
| Total bases |
2,792,536,035.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3165248 (99.8%) 2788.1Mb |
| >Q7 |
3032474 (95.6%) 2361.2Mb |
| >Q10 |
2362709 (74.5%) 1665.2Mb |
| >Q12 |
1410933 (44.5%) 1033.6Mb |
| >Q15 |
195478 (6.2%) 134.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
31.4 (22) |
| 2 |
29.9 (17) |
| 3 |
29.5 (25) |
| 4 |
29.5 (35) |
| 5 |
29.3 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
268902 (6.9) |
| 2 |
258998 (7.6) |
| 3 |
241260 (6.5) |
| 4 |
239856 (7.4) |
| 5 |
233319 (7.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot