NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,057.1 |
| Mean read quality |
5.6 |
| Median read length |
2,160.0 |
| Median read quality |
6.7 |
| Number of reads |
1,661,409.0 |
| Read length N50 |
5,190.0 |
| STDEV read length |
2,884.4 |
| Total bases |
5,079,015,018.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1307268 (78.7%) 4343.1Mb |
| >Q7 |
738897 (44.5%) 2577.0Mb |
| >Q10 |
17080 (1.0%) 53.7Mb |
| >Q12 |
11 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.7 (241) |
| 2 |
12.5 (142) |
| 3 |
12.4 (416) |
| 4 |
12.3 (327) |
| 5 |
12.2 (236) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
154859 (3.3) |
| 2 |
45323 (3.6) |
| 3 |
45053 (6.7) |
| 4 |
43246 (8.4) |
| 5 |
41163 (8.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot