NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
710.6 |
| Mean read quality |
4.9 |
| Median read length |
456.0 |
| Median read quality |
5.9 |
| Number of reads |
3,076,448.0 |
| Read length N50 |
1,055.0 |
| STDEV read length |
901.3 |
| Total bases |
2,186,075,056.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2058587 (66.9%) 1706.6Mb |
| >Q7 |
905441 (29.4%) 803.0Mb |
| >Q10 |
23431 (0.8%) 14.4Mb |
| >Q12 |
659 (0.0%) 0.0Mb |
| >Q15 |
55 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.6 (16) |
| 2 |
17.8 (17) |
| 3 |
17.7 (16) |
| 4 |
17.7 (16) |
| 5 |
17.6 (18) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
36819 (7.2) |
| 2 |
36661 (4.9) |
| 3 |
36641 (8.9) |
| 4 |
36244 (9.2) |
| 5 |
36230 (10.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot