NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,559.2 |
| Mean read quality |
6.0 |
| Median read length |
946.0 |
| Median read quality |
6.9 |
| Number of reads |
3,090,759.0 |
| Read length N50 |
2,507.0 |
| STDEV read length |
1,711.1 |
| Total bases |
4,819,216,033.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2539845 (82.2%) 3988.9Mb |
| >Q7 |
1489977 (48.2%) 2502.0Mb |
| >Q10 |
157668 (5.1%) 271.8Mb |
| >Q12 |
45746 (1.5%) 87.3Mb |
| >Q15 |
792 (0.0%) 1.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.2 (848) |
| 2 |
17.1 (360) |
| 3 |
17.1 (893) |
| 4 |
17.0 (297) |
| 5 |
16.8 (2423) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
282470 (4.7) |
| 2 |
239220 (3.7) |
| 3 |
177586 (4.2) |
| 4 |
165400 (5.5) |
| 5 |
161157 (4.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot