NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
878.5 |
| Mean read quality |
5.2 |
| Median read length |
620.0 |
| Median read quality |
6.3 |
| Number of reads |
2,839,588.0 |
| Read length N50 |
1,208.0 |
| STDEV read length |
783.9 |
| Total bases |
2,494,619,050.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2066015 (72.8%) 2008.7Mb |
| >Q7 |
982932 (34.6%) 1032.2Mb |
| >Q10 |
12801 (0.5%) 13.1Mb |
| >Q12 |
5 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.5 (260) |
| 2 |
12.4 (348) |
| 3 |
12.2 (349) |
| 4 |
12.2 (405) |
| 5 |
12.1 (344) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
37833 (3.0) |
| 2 |
34839 (3.5) |
| 3 |
24651 (6.2) |
| 4 |
21235 (2.3) |
| 5 |
19953 (4.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot