NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,243.2 |
| Mean read quality |
6.5 |
| Median read length |
1,383.0 |
| Median read quality |
7.4 |
| Number of reads |
710,597.0 |
| Read length N50 |
4,056.0 |
| STDEV read length |
2,491.6 |
| Total bases |
1,594,020,673.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
602625 (84.8%) 1431.6Mb |
| >Q7 |
410890 (57.8%) 1082.4Mb |
| >Q10 |
171935 (24.2%) 510.5Mb |
| >Q12 |
101079 (14.2%) 315.4Mb |
| >Q15 |
544 (0.1%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.8 (16) |
| 2 |
20.8 (16) |
| 3 |
19.4 (45) |
| 4 |
17.6 (16) |
| 5 |
17.6 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
113166 (7.9) |
| 2 |
80558 (8.1) |
| 3 |
74142 (9.6) |
| 4 |
70657 (8.9) |
| 5 |
64081 (8.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot