NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,372.1 |
| Mean read quality |
5.7 |
| Median read length |
850.0 |
| Median read quality |
6.6 |
| Number of reads |
3,049,227.0 |
| Read length N50 |
2,035.0 |
| STDEV read length |
1,566.0 |
| Total bases |
4,183,981,026.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2340734 (76.8%) 3281.0Mb |
| >Q7 |
1268026 (41.6%) 1885.4Mb |
| >Q10 |
107443 (3.5%) 166.3Mb |
| >Q12 |
26958 (0.9%) 48.6Mb |
| >Q15 |
373 (0.0%) 0.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (861) |
| 2 |
16.7 (437) |
| 3 |
16.7 (305) |
| 4 |
16.6 (369) |
| 5 |
16.5 (306) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
323847 (6.2) |
| 2 |
155101 (4.4) |
| 3 |
129103 (3.6) |
| 4 |
127741 (4.4) |
| 5 |
120685 (5.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot