NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
394.0 |
| Mean read quality |
5.5 |
| Median read length |
316.0 |
| Median read quality |
6.7 |
| Number of reads |
4,553,929.0 |
| Read length N50 |
574.0 |
| STDEV read length |
344.7 |
| Total bases |
1,794,148,492.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3465474 (76.1%) 1507.3Mb |
| >Q7 |
1973388 (43.3%) 885.9Mb |
| >Q10 |
179839 (3.9%) 49.6Mb |
| >Q12 |
27884 (0.6%) 1.1Mb |
| >Q15 |
4614 (0.1%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
24.9 (17) |
| 2 |
23.4 (18) |
| 3 |
23.2 (18) |
| 4 |
23.1 (16) |
| 5 |
22.9 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
80641 (2.4) |
| 2 |
50842 (3.5) |
| 3 |
31097 (2.2) |
| 4 |
24535 (3.5) |
| 5 |
19502 (5.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot