NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,972.8 |
| Mean read quality |
11.9 |
| Median read length |
3,938.0 |
| Median read quality |
13.2 |
| Number of reads |
607,133.0 |
| Read length N50 |
5,053.0 |
| STDEV read length |
3,367.6 |
| Total bases |
2,412,021,613.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
606926 (100.0%) 2411.4Mb |
| >Q7 |
599005 (98.7%) 2357.9Mb |
| >Q10 |
542588 (89.4%) 2147.8Mb |
| >Q12 |
431373 (71.1%) 1763.0Mb |
| >Q15 |
114016 (18.8%) 486.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
22.3 (942) |
| 2 |
22.2 (1051) |
| 3 |
22.1 (2746) |
| 4 |
22.1 (484) |
| 5 |
22.0 (1649) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
484396 (6.5) |
| 2 |
453317 (7.0) |
| 3 |
346299 (6.8) |
| 4 |
322502 (7.1) |
| 5 |
290118 (6.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot