NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,677.7 |
| Mean read quality |
5.5 |
| Median read length |
760.0 |
| Median read quality |
6.6 |
| Number of reads |
2,473,995.0 |
| Read length N50 |
3,764.0 |
| STDEV read length |
2,343.7 |
| Total bases |
4,150,524,333.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1882062 (76.1%) 3486.0Mb |
| >Q7 |
1026183 (41.5%) 2060.1Mb |
| >Q10 |
26824 (1.1%) 47.4Mb |
| >Q12 |
48 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.3 (431) |
| 2 |
12.9 (381) |
| 3 |
12.8 (475) |
| 4 |
12.7 (185) |
| 5 |
12.7 (445) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
75359 (5.6) |
| 2 |
52644 (7.3) |
| 3 |
43151 (9.2) |
| 4 |
40252 (7.9) |
| 5 |
37290 (7.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot