NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,962.3 |
| Mean read quality |
5.9 |
| Median read length |
1,239.0 |
| Median read quality |
6.8 |
| Number of reads |
2,935,338.0 |
| Read length N50 |
3,131.0 |
| STDEV read length |
2,081.3 |
| Total bases |
5,759,974,402.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2335040 (79.5%) 4686.6Mb |
| >Q7 |
1350627 (46.0%) 2924.3Mb |
| >Q10 |
171094 (5.8%) 401.7Mb |
| >Q12 |
60245 (2.1%) 158.4Mb |
| >Q15 |
1146 (0.0%) 3.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.7 (397) |
| 2 |
16.8 (325) |
| 3 |
16.7 (501) |
| 4 |
16.6 (1564) |
| 5 |
16.6 (760) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
282146 (3.7) |
| 2 |
228058 (3.8) |
| 3 |
219350 (5.9) |
| 4 |
139492 (6.5) |
| 5 |
125140 (4.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot