NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,166.5 |
| Mean read quality |
6.0 |
| Median read length |
530.0 |
| Median read quality |
7.0 |
| Number of reads |
834,371.0 |
| Read length N50 |
2,531.0 |
| STDEV read length |
1,712.5 |
| Total bases |
973,262,277.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
663023 (79.5%) 854.9Mb |
| >Q7 |
421101 (50.5%) 649.0Mb |
| >Q10 |
179820 (21.6%) 326.8Mb |
| >Q12 |
98048 (11.8%) 191.2Mb |
| >Q15 |
861 (0.1%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.3 (18) |
| 2 |
17.3 (215) |
| 3 |
17.1 (79) |
| 4 |
16.8 (193) |
| 5 |
16.7 (278) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
85518 (7.8) |
| 2 |
62054 (8.5) |
| 3 |
60279 (6.6) |
| 4 |
58463 (8.1) |
| 5 |
56745 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot