NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
848.1 |
| Mean read quality |
5.8 |
| Median read length |
515.0 |
| Median read quality |
6.9 |
| Number of reads |
2,514,611.0 |
| Read length N50 |
1,448.0 |
| STDEV read length |
940.7 |
| Total bases |
2,132,683,068.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2012860 (80.0%) 1845.9Mb |
| >Q7 |
1230440 (48.9%) 1187.4Mb |
| >Q10 |
72162 (2.9%) 48.8Mb |
| >Q12 |
4615 (0.2%) 0.3Mb |
| >Q15 |
637 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
22.2 (16) |
| 2 |
21.8 (17) |
| 3 |
21.8 (19) |
| 4 |
21.1 (16) |
| 5 |
20.5 (17) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
27637 (4.1) |
| 2 |
25633 (3.3) |
| 3 |
22084 (4.7) |
| 4 |
21333 (4.0) |
| 5 |
20248 (4.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot