NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,180.8 |
| Mean read quality |
10.5 |
| Median read length |
1,665.0 |
| Median read quality |
11.9 |
| Number of reads |
2,461,948.0 |
| Read length N50 |
6,381.0 |
| STDEV read length |
3,947.0 |
| Total bases |
7,830,994,859.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2456630 (99.8%) 7829.1Mb |
| >Q7 |
2373489 (96.4%) 7550.0Mb |
| >Q10 |
1863920 (75.7%) 6133.3Mb |
| >Q12 |
1172209 (47.6%) 4150.0Mb |
| >Q15 |
205358 (8.3%) 750.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
24.1 (341) |
| 2 |
23.4 (459) |
| 3 |
23.3 (424) |
| 4 |
23.2 (687) |
| 5 |
22.9 (502) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
494803 (7.2) |
| 2 |
444198 (10.9) |
| 3 |
381287 (11.1) |
| 4 |
369974 (7.9) |
| 5 |
369789 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot