NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
836.4 |
| Mean read quality |
5.4 |
| Median read length |
625.0 |
| Median read quality |
6.4 |
| Number of reads |
2,239,108.0 |
| Read length N50 |
1,123.0 |
| STDEV read length |
694.0 |
| Total bases |
1,872,874,994.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1700748 (76.0%) 1547.4Mb |
| >Q7 |
813202 (36.3%) 786.8Mb |
| >Q10 |
13426 (0.6%) 11.4Mb |
| >Q12 |
27 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.1 (28) |
| 2 |
13.5 (169) |
| 3 |
13.0 (277) |
| 4 |
12.9 (343) |
| 5 |
12.9 (221) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
36649 (5.3) |
| 2 |
35083 (3.8) |
| 3 |
31067 (3.8) |
| 4 |
28335 (3.6) |
| 5 |
20072 (4.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot