NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,248.1 |
| Mean read quality |
5.5 |
| Median read length |
840.0 |
| Median read quality |
6.6 |
| Number of reads |
2,555,577.0 |
| Read length N50 |
1,845.0 |
| STDEV read length |
1,182.4 |
| Total bases |
3,189,616,767.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1983227 (77.6%) 2705.1Mb |
| >Q7 |
1052548 (41.2%) 1581.6Mb |
| >Q10 |
9517 (0.4%) 19.2Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.9 (726) |
| 2 |
11.7 (1926) |
| 3 |
11.7 (2609) |
| 4 |
11.7 (2983) |
| 5 |
11.6 (787) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
95643 (2.7) |
| 2 |
49915 (3.9) |
| 3 |
43330 (3.5) |
| 4 |
38017 (4.9) |
| 5 |
33264 (5.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot