NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,843.6 |
| Mean read quality |
8.7 |
| Median read length |
1,731.0 |
| Median read quality |
9.1 |
| Number of reads |
143,140.0 |
| Read length N50 |
4,947.0 |
| STDEV read length |
3,333.7 |
| Total bases |
407,035,825.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
143003 (99.9%) 407.0Mb |
| >Q7 |
142644 (99.7%) 406.9Mb |
| >Q10 |
40719 (28.4%) 84.9Mb |
| >Q12 |
12378 (8.6%) 21.8Mb |
| >Q15 |
1041 (0.7%) 0.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
30.4 (25) |
| 2 |
29.0 (17) |
| 3 |
28.7 (16) |
| 4 |
27.6 (16) |
| 5 |
26.7 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
72972 (7.4) |
| 2 |
69776 (8.7) |
| 3 |
66689 (8.4) |
| 4 |
63657 (8.5) |
| 5 |
59879 (11.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot