NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,649.7 |
| Mean read quality |
8.7 |
| Median read length |
1,621.0 |
| Median read quality |
9.1 |
| Number of reads |
57,045.0 |
| Read length N50 |
4,684.0 |
| STDEV read length |
3,114.2 |
| Total bases |
151,154,426.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
56885 (99.7%) 151.1Mb |
| >Q7 |
56505 (99.1%) 151.0Mb |
| >Q10 |
17463 (30.6%) 33.2Mb |
| >Q12 |
5810 (10.2%) 9.0Mb |
| >Q15 |
755 (1.3%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
37.0 (17) |
| 2 |
35.8 (16) |
| 3 |
32.8 (17) |
| 4 |
32.0 (17) |
| 5 |
31.6 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
60436 (7.8) |
| 2 |
53040 (7.5) |
| 3 |
51831 (8.2) |
| 4 |
49472 (8.7) |
| 5 |
46284 (8.5) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,650.2 |
| Mean read quality |
8.7 |
| Median read length |
1,622.0 |
| Median read quality |
9.1 |
| Number of reads |
57,034.0 |
| Read length N50 |
4,684.0 |
| STDEV read length |
3,114.3 |
| Total bases |
151,154,244.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
56874 (99.7%) 151.1Mb |
| >Q7 |
56494 (99.1%) 151.0Mb |
| >Q10 |
17452 (30.6%) 33.2Mb |
| >Q12 |
5799 (10.2%) 9.0Mb |
| >Q15 |
744 (1.3%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.9 (19) |
| 2 |
28.9 (17) |
| 3 |
28.7 (17) |
| 4 |
28.5 (16) |
| 5 |
28.4 (36) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
60436 (7.8) |
| 2 |
53040 (7.5) |
| 3 |
51831 (8.2) |
| 4 |
49472 (8.7) |
| 5 |
46284 (8.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot