NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,422.5 |
| Mean read quality |
8.6 |
| Median read length |
1,374.0 |
| Median read quality |
9.0 |
| Number of reads |
12,052.0 |
| Read length N50 |
4,683.0 |
| STDEV read length |
3,032.1 |
| Total bases |
29,196,402.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
12035 (99.9%) 29.2Mb |
| >Q7 |
11950 (99.2%) 29.2Mb |
| >Q10 |
3473 (28.8%) 6.1Mb |
| >Q12 |
1209 (10.0%) 1.6Mb |
| >Q15 |
175 (1.5%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.8 (19) |
| 2 |
29.6 (16) |
| 3 |
27.5 (20) |
| 4 |
26.9 (16) |
| 5 |
25.3 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
35920 (7.5) |
| 2 |
35235 (8.0) |
| 3 |
35070 (8.7) |
| 4 |
30482 (7.9) |
| 5 |
29743 (8.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot