NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,688.6 |
| Mean read quality |
8.7 |
| Median read length |
1,632.0 |
| Median read quality |
9.1 |
| Number of reads |
127,297.0 |
| Read length N50 |
4,684.0 |
| STDEV read length |
3,149.4 |
| Total bases |
342,256,830.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
127091 (99.8%) 342.2Mb |
| >Q7 |
126592 (99.4%) 342.0Mb |
| >Q10 |
37401 (29.4%) 73.9Mb |
| >Q12 |
11736 (9.2%) 19.3Mb |
| >Q15 |
1188 (0.9%) 0.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
31.5 (17) |
| 2 |
30.6 (16) |
| 3 |
30.5 (16) |
| 4 |
30.0 (16) |
| 5 |
29.9 (18) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
86160 (8.0) |
| 2 |
65493 (10.8) |
| 3 |
58973 (7.5) |
| 4 |
53926 (10.3) |
| 5 |
51325 (8.4) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,688.7 |
| Mean read quality |
8.7 |
| Median read length |
1,632.0 |
| Median read quality |
9.1 |
| Number of reads |
127,293.0 |
| Read length N50 |
4,684.0 |
| STDEV read length |
3,149.4 |
| Total bases |
342,256,765.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
127087 (99.8%) 342.2Mb |
| >Q7 |
126588 (99.4%) 342.0Mb |
| >Q10 |
37397 (29.4%) 73.9Mb |
| >Q12 |
11732 (9.2%) 19.3Mb |
| >Q15 |
1184 (0.9%) 0.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.9 (18) |
| 2 |
29.5 (16) |
| 3 |
29.2 (17) |
| 4 |
29.2 (18) |
| 5 |
28.8 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
86160 (8.0) |
| 2 |
65493 (10.8) |
| 3 |
58973 (7.5) |
| 4 |
53926 (10.3) |
| 5 |
51325 (8.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot