NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,775.1 |
| Mean read quality |
8.6 |
| Median read length |
1,723.0 |
| Median read quality |
9.0 |
| Number of reads |
62,317.0 |
| Read length N50 |
4,803.0 |
| STDEV read length |
3,229.2 |
| Total bases |
172,933,191.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
62173 (99.8%) 172.9Mb |
| >Q7 |
61829 (99.2%) 172.7Mb |
| >Q10 |
16250 (26.1%) 32.6Mb |
| >Q12 |
4748 (7.6%) 7.5Mb |
| >Q15 |
522 (0.8%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.0 (18) |
| 2 |
28.1 (17) |
| 3 |
27.0 (16) |
| 4 |
26.7 (17) |
| 5 |
26.3 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
58026 (8.2) |
| 2 |
54984 (8.3) |
| 3 |
54539 (9.2) |
| 4 |
50571 (8.5) |
| 5 |
49400 (7.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot