NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,923.4 |
| Mean read quality |
8.6 |
| Median read length |
1,799.0 |
| Median read quality |
9.0 |
| Number of reads |
62,444.0 |
| Read length N50 |
5,108.0 |
| STDEV read length |
3,449.9 |
| Total bases |
182,549,255.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
62321 (99.8%) 182.5Mb |
| >Q7 |
61989 (99.3%) 182.4Mb |
| >Q10 |
16866 (27.0%) 35.4Mb |
| >Q12 |
4965 (8.0%) 8.4Mb |
| >Q15 |
575 (0.9%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
31.7 (17) |
| 2 |
30.9 (16) |
| 3 |
29.9 (16) |
| 4 |
28.9 (16) |
| 5 |
28.7 (18) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
75589 (8.1) |
| 2 |
72795 (8.3) |
| 3 |
64955 (8.8) |
| 4 |
55300 (9.0) |
| 5 |
46146 (9.1) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,923.5 |
| Mean read quality |
8.6 |
| Median read length |
1,799.5 |
| Median read quality |
9.0 |
| Number of reads |
62,442.0 |
| Read length N50 |
5,109.0 |
| STDEV read length |
3,449.9 |
| Total bases |
182,549,222.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
62319 (99.8%) 182.5Mb |
| >Q7 |
61987 (99.3%) 182.4Mb |
| >Q10 |
16864 (27.0%) 35.4Mb |
| >Q12 |
4963 (7.9%) 8.4Mb |
| >Q15 |
573 (0.9%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.9 (16) |
| 2 |
28.9 (16) |
| 3 |
28.7 (18) |
| 4 |
28.3 (16) |
| 5 |
28.2 (17) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
75589 (8.1) |
| 2 |
72795 (8.3) |
| 3 |
64955 (8.8) |
| 4 |
55300 (9.0) |
| 5 |
46146 (9.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot