NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,695.9 |
| Mean read quality |
8.7 |
| Median read length |
1,664.0 |
| Median read quality |
9.1 |
| Number of reads |
162,886.0 |
| Read length N50 |
4,610.0 |
| STDEV read length |
3,139.6 |
| Total bases |
439,126,102.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
162637 (99.8%) 439.1Mb |
| >Q7 |
162018 (99.5%) 438.8Mb |
| >Q10 |
50624 (31.1%) 100.8Mb |
| >Q12 |
16428 (10.1%) 28.2Mb |
| >Q15 |
1572 (1.0%) 1.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.5 (16) |
| 2 |
29.4 (16) |
| 3 |
29.3 (16) |
| 4 |
29.3 (16) |
| 5 |
29.2 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
58924 (8.1) |
| 2 |
57500 (8.4) |
| 3 |
54299 (7.8) |
| 4 |
53398 (8.0) |
| 5 |
52157 (7.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot