NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,837.8 |
| Mean read quality |
8.7 |
| Median read length |
1,787.0 |
| Median read quality |
9.1 |
| Number of reads |
130,808.0 |
| Read length N50 |
4,791.0 |
| STDEV read length |
3,212.1 |
| Total bases |
371,209,814.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
130556 (99.8%) 371.2Mb |
| >Q7 |
130073 (99.4%) 371.0Mb |
| >Q10 |
38234 (29.2%) 81.2Mb |
| >Q12 |
12193 (9.3%) 21.8Mb |
| >Q15 |
1057 (0.8%) 0.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
32.8 (16) |
| 2 |
32.1 (16) |
| 3 |
29.7 (16) |
| 4 |
29.7 (16) |
| 5 |
29.7 (39) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
58348 (8.9) |
| 2 |
54991 (7.5) |
| 3 |
53743 (8.1) |
| 4 |
53459 (8.2) |
| 5 |
48642 (7.8) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,837.9 |
| Mean read quality |
8.7 |
| Median read length |
1,787.0 |
| Median read quality |
9.1 |
| Number of reads |
130,806.0 |
| Read length N50 |
4,791.0 |
| STDEV read length |
3,212.1 |
| Total bases |
371,209,782.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
130554 (99.8%) 371.2Mb |
| >Q7 |
130071 (99.4%) 371.0Mb |
| >Q10 |
38232 (29.2%) 81.2Mb |
| >Q12 |
12191 (9.3%) 21.8Mb |
| >Q15 |
1055 (0.8%) 0.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.7 (16) |
| 2 |
29.7 (16) |
| 3 |
29.7 (39) |
| 4 |
29.2 (16) |
| 5 |
28.7 (24) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
58348 (8.9) |
| 2 |
54991 (7.5) |
| 3 |
53743 (8.1) |
| 4 |
53459 (8.2) |
| 5 |
48642 (7.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot