NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,702.7 |
| Mean read quality |
8.7 |
| Median read length |
1,664.0 |
| Median read quality |
9.2 |
| Number of reads |
93,505.0 |
| Read length N50 |
4,789.0 |
| STDEV read length |
3,199.6 |
| Total bases |
252,711,476.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
93165 (99.6%) 252.7Mb |
| >Q7 |
92219 (98.6%) 252.4Mb |
| >Q10 |
29481 (31.5%) 59.6Mb |
| >Q12 |
9059 (9.7%) 12.9Mb |
| >Q15 |
1575 (1.7%) 0.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
33.1 (16) |
| 2 |
32.1 (17) |
| 3 |
31.5 (16) |
| 4 |
31.5 (23) |
| 5 |
31.4 (18) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
66093 (7.5) |
| 2 |
49011 (8.0) |
| 3 |
48540 (11.0) |
| 4 |
48282 (8.8) |
| 5 |
46177 (8.6) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,702.9 |
| Mean read quality |
8.7 |
| Median read length |
1,664.0 |
| Median read quality |
9.2 |
| Number of reads |
93,496.0 |
| Read length N50 |
4,789.0 |
| STDEV read length |
3,199.6 |
| Total bases |
252,711,328.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
93156 (99.6%) 252.7Mb |
| >Q7 |
92210 (98.6%) 252.4Mb |
| >Q10 |
29472 (31.5%) 59.6Mb |
| >Q12 |
9050 (9.7%) 12.9Mb |
| >Q15 |
1566 (1.7%) 0.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
31.5 (23) |
| 2 |
29.9 (16) |
| 3 |
29.8 (27) |
| 4 |
29.8 (16) |
| 5 |
29.8 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
66093 (7.5) |
| 2 |
49011 (8.0) |
| 3 |
48540 (11.0) |
| 4 |
48282 (8.8) |
| 5 |
46177 (8.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot