NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,818.9 |
| Mean read quality |
8.7 |
| Median read length |
1,746.0 |
| Median read quality |
9.0 |
| Number of reads |
140,645.0 |
| Read length N50 |
4,878.0 |
| STDEV read length |
3,269.5 |
| Total bases |
396,465,639.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
140496 (99.9%) 396.5Mb |
| >Q7 |
140149 (99.6%) 396.3Mb |
| >Q10 |
40029 (28.5%) 83.6Mb |
| >Q12 |
11919 (8.5%) 20.3Mb |
| >Q15 |
996 (0.7%) 0.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
31.3 (16) |
| 2 |
30.8 (16) |
| 3 |
29.9 (17) |
| 4 |
29.7 (16) |
| 5 |
28.3 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
68301 (8.2) |
| 2 |
59336 (7.9) |
| 3 |
57844 (8.4) |
| 4 |
57472 (8.3) |
| 5 |
57369 (8.7) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,819.0 |
| Mean read quality |
8.7 |
| Median read length |
1,746.0 |
| Median read quality |
9.0 |
| Number of reads |
140,643.0 |
| Read length N50 |
4,878.0 |
| STDEV read length |
3,269.5 |
| Total bases |
396,465,607.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
140494 (99.9%) 396.5Mb |
| >Q7 |
140147 (99.6%) 396.3Mb |
| >Q10 |
40027 (28.5%) 83.6Mb |
| >Q12 |
11917 (8.5%) 20.3Mb |
| >Q15 |
994 (0.7%) 0.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.9 (17) |
| 2 |
29.7 (16) |
| 3 |
28.3 (16) |
| 4 |
28.2 (16) |
| 5 |
27.9 (24) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
68301 (8.2) |
| 2 |
59336 (7.9) |
| 3 |
57844 (8.4) |
| 4 |
57472 (8.3) |
| 5 |
57369 (8.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot