NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,761.0 |
| Mean read quality |
8.6 |
| Median read length |
1,697.0 |
| Median read quality |
9.0 |
| Number of reads |
110,184.0 |
| Read length N50 |
4,766.0 |
| STDEV read length |
3,232.6 |
| Total bases |
304,222,598.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
109997 (99.8%) 304.2Mb |
| >Q7 |
109535 (99.4%) 304.0Mb |
| >Q10 |
31012 (28.1%) 63.6Mb |
| >Q12 |
9094 (8.3%) 15.5Mb |
| >Q15 |
938 (0.9%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
32.4 (18) |
| 2 |
31.8 (18) |
| 3 |
29.6 (16) |
| 4 |
29.4 (19) |
| 5 |
28.1 (31) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
54901 (9.1) |
| 2 |
51813 (8.8) |
| 3 |
49692 (7.8) |
| 4 |
48488 (10.2) |
| 5 |
48058 (8.4) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,761.1 |
| Mean read quality |
8.6 |
| Median read length |
1,697.0 |
| Median read quality |
9.0 |
| Number of reads |
110,182.0 |
| Read length N50 |
4,766.0 |
| STDEV read length |
3,232.6 |
| Total bases |
304,222,562.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
109995 (99.8%) 304.2Mb |
| >Q7 |
109533 (99.4%) 304.0Mb |
| >Q10 |
31010 (28.1%) 63.6Mb |
| >Q12 |
9092 (8.3%) 15.5Mb |
| >Q15 |
936 (0.8%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.6 (16) |
| 2 |
29.4 (19) |
| 3 |
28.1 (31) |
| 4 |
28.0 (16) |
| 5 |
27.7 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
54901 (9.1) |
| 2 |
51813 (8.8) |
| 3 |
49692 (7.8) |
| 4 |
48488 (10.2) |
| 5 |
48058 (8.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot