NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,774.8 |
| Mean read quality |
8.7 |
| Median read length |
1,677.0 |
| Median read quality |
9.1 |
| Number of reads |
43,735.0 |
| Read length N50 |
4,960.0 |
| STDEV read length |
3,318.1 |
| Total bases |
121,357,739.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
43627 (99.8%) 121.3Mb |
| >Q7 |
43292 (99.0%) 121.2Mb |
| >Q10 |
12676 (29.0%) 26.4Mb |
| >Q12 |
4038 (9.2%) 6.4Mb |
| >Q15 |
555 (1.3%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
33.5 (17) |
| 2 |
31.4 (26) |
| 3 |
31.0 (18) |
| 4 |
31.0 (18) |
| 5 |
30.3 (17) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
50755 (8.4) |
| 2 |
49891 (8.3) |
| 3 |
47612 (9.7) |
| 4 |
47240 (9.0) |
| 5 |
43644 (8.3) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,775.1 |
| Mean read quality |
8.7 |
| Median read length |
1,678.0 |
| Median read quality |
9.1 |
| Number of reads |
43,731.0 |
| Read length N50 |
4,960.0 |
| STDEV read length |
3,318.2 |
| Total bases |
121,357,669.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
43623 (99.8%) 121.3Mb |
| >Q7 |
43288 (99.0%) 121.2Mb |
| >Q10 |
12672 (29.0%) 26.4Mb |
| >Q12 |
4034 (9.2%) 6.4Mb |
| >Q15 |
551 (1.3%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
31.4 (26) |
| 2 |
28.8 (16) |
| 3 |
28.7 (16) |
| 4 |
28.1 (16) |
| 5 |
27.9 (18) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
50755 (8.4) |
| 2 |
49891 (8.3) |
| 3 |
47612 (9.7) |
| 4 |
47240 (9.0) |
| 5 |
43644 (8.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot