NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,590.4 |
| Mean read quality |
8.6 |
| Median read length |
1,511.5 |
| Median read quality |
9.0 |
| Number of reads |
8,976.0 |
| Read length N50 |
4,801.0 |
| STDEV read length |
3,216.7 |
| Total bases |
23,251,839.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
8962 (99.8%) 23.3Mb |
| >Q7 |
8873 (98.9%) 23.2Mb |
| >Q10 |
2702 (30.1%) 5.3Mb |
| >Q12 |
995 (11.1%) 1.5Mb |
| >Q15 |
157 (1.7%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
28.5 (23) |
| 2 |
26.6 (19) |
| 3 |
26.5 (19) |
| 4 |
26.3 (24) |
| 5 |
25.9 (33) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
37191 (8.5) |
| 2 |
35933 (9.2) |
| 3 |
34481 (12.5) |
| 4 |
33529 (8.6) |
| 5 |
30832 (9.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot