NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,882.2 |
| Mean read quality |
8.8 |
| Median read length |
1,783.0 |
| Median read quality |
9.1 |
| Number of reads |
122,429.0 |
| Read length N50 |
4,972.0 |
| STDEV read length |
3,332.3 |
| Total bases |
352,864,537.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
122275 (99.9%) 352.9Mb |
| >Q7 |
121761 (99.5%) 352.6Mb |
| >Q10 |
37924 (31.0%) 80.6Mb |
| >Q12 |
13091 (10.7%) 22.6Mb |
| >Q15 |
2063 (1.7%) 1.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
35.7 (16) |
| 2 |
35.6 (17) |
| 3 |
35.0 (16) |
| 4 |
34.6 (16) |
| 5 |
34.5 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
63739 (7.8) |
| 2 |
53327 (9.3) |
| 3 |
47603 (7.9) |
| 4 |
44835 (10.2) |
| 5 |
44383 (8.9) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,883.0 |
| Mean read quality |
8.8 |
| Median read length |
1,784.0 |
| Median read quality |
9.1 |
| Number of reads |
122,393.0 |
| Read length N50 |
4,972.0 |
| STDEV read length |
3,332.4 |
| Total bases |
352,863,942.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
122239 (99.9%) 352.9Mb |
| >Q7 |
121725 (99.5%) 352.6Mb |
| >Q10 |
37888 (31.0%) 80.6Mb |
| >Q12 |
13055 (10.7%) 22.6Mb |
| >Q15 |
2027 (1.7%) 1.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
33.6 (20) |
| 2 |
30.7 (24) |
| 3 |
30.4 (26) |
| 4 |
30.3 (48) |
| 5 |
30.0 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
63739 (7.8) |
| 2 |
53327 (9.3) |
| 3 |
47603 (7.9) |
| 4 |
44835 (10.2) |
| 5 |
44383 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot