NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,980.6 |
| Mean read quality |
8.6 |
| Median read length |
1,904.0 |
| Median read quality |
8.9 |
| Number of reads |
107,731.0 |
| Read length N50 |
4,939.0 |
| STDEV read length |
3,316.1 |
| Total bases |
321,101,475.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
107575 (99.9%) 321.1Mb |
| >Q7 |
107220 (99.5%) 321.0Mb |
| >Q10 |
28029 (26.0%) 62.9Mb |
| >Q12 |
8466 (7.9%) 16.4Mb |
| >Q15 |
647 (0.6%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
30.4 (16) |
| 2 |
30.0 (16) |
| 3 |
29.2 (17) |
| 4 |
28.6 (17) |
| 5 |
28.6 (17) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
62069 (7.9) |
| 2 |
58468 (9.1) |
| 3 |
55021 (8.6) |
| 4 |
53813 (8.1) |
| 5 |
51874 (9.2) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,980.6 |
| Mean read quality |
8.6 |
| Median read length |
1,904.0 |
| Median read quality |
8.9 |
| Number of reads |
107,729.0 |
| Read length N50 |
4,939.0 |
| STDEV read length |
3,316.1 |
| Total bases |
321,101,443.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
107573 (99.9%) 321.1Mb |
| >Q7 |
107218 (99.5%) 321.0Mb |
| >Q10 |
28027 (26.0%) 62.9Mb |
| >Q12 |
8464 (7.9%) 16.4Mb |
| >Q15 |
645 (0.6%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.2 (17) |
| 2 |
28.6 (17) |
| 3 |
28.6 (17) |
| 4 |
26.8 (16) |
| 5 |
26.6 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
62069 (7.9) |
| 2 |
58468 (9.1) |
| 3 |
55021 (8.6) |
| 4 |
53813 (8.1) |
| 5 |
51874 (9.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot