NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,907.9 |
| Mean read quality |
8.6 |
| Median read length |
1,831.0 |
| Median read quality |
9.0 |
| Number of reads |
196,482.0 |
| Read length N50 |
4,819.0 |
| STDEV read length |
3,261.7 |
| Total bases |
571,359,444.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
196168 (99.8%) 571.3Mb |
| >Q7 |
195540 (99.5%) 571.1Mb |
| >Q10 |
52720 (26.8%) 114.2Mb |
| >Q12 |
15940 (8.1%) 29.0Mb |
| >Q15 |
1301 (0.7%) 1.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
33.2 (19) |
| 2 |
32.2 (16) |
| 3 |
31.4 (16) |
| 4 |
31.4 (19) |
| 5 |
30.6 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
65034 (7.7) |
| 2 |
64031 (7.9) |
| 3 |
51120 (8.4) |
| 4 |
49706 (8.2) |
| 5 |
47686 (9.9) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,908.0 |
| Mean read quality |
8.6 |
| Median read length |
1,831.0 |
| Median read quality |
9.0 |
| Number of reads |
196,476.0 |
| Read length N50 |
4,819.0 |
| STDEV read length |
3,261.7 |
| Total bases |
571,359,342.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
196162 (99.8%) 571.3Mb |
| >Q7 |
195534 (99.5%) 571.1Mb |
| >Q10 |
52714 (26.8%) 114.2Mb |
| >Q12 |
15934 (8.1%) 29.0Mb |
| >Q15 |
1295 (0.7%) 1.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.8 (17) |
| 2 |
29.7 (16) |
| 3 |
28.6 (16) |
| 4 |
28.6 (16) |
| 5 |
28.5 (17) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
65034 (7.7) |
| 2 |
64031 (7.9) |
| 3 |
51120 (8.4) |
| 4 |
49706 (8.2) |
| 5 |
47686 (9.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot