NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,888.2 |
| Mean read quality |
8.8 |
| Median read length |
1,800.0 |
| Median read quality |
9.2 |
| Number of reads |
240,088.0 |
| Read length N50 |
4,903.0 |
| STDEV read length |
3,297.7 |
| Total bases |
693,421,798.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
239412 (99.7%) 693.3Mb |
| >Q7 |
237744 (99.0%) 692.4Mb |
| >Q10 |
77250 (32.2%) 172.3Mb |
| >Q12 |
28112 (11.7%) 51.0Mb |
| >Q15 |
4288 (1.8%) 3.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
38.2 (16) |
| 2 |
37.2 (16) |
| 3 |
36.0 (16) |
| 4 |
36.0 (19) |
| 5 |
35.3 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
63875 (9.8) |
| 2 |
58280 (9.3) |
| 3 |
57832 (9.0) |
| 4 |
57107 (10.3) |
| 5 |
53040 (9.1) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,888.8 |
| Mean read quality |
8.8 |
| Median read length |
1,800.0 |
| Median read quality |
9.2 |
| Number of reads |
240,035.0 |
| Read length N50 |
4,903.0 |
| STDEV read length |
3,297.8 |
| Total bases |
693,420,928.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
239359 (99.7%) 693.3Mb |
| >Q7 |
237691 (99.0%) 692.4Mb |
| >Q10 |
77197 (32.2%) 172.3Mb |
| >Q12 |
28059 (11.7%) 51.0Mb |
| >Q15 |
4235 (1.8%) 3.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
33.1 (21) |
| 2 |
30.3 (21) |
| 3 |
30.1 (25) |
| 4 |
30.0 (21) |
| 5 |
30.0 (16) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
63875 (9.8) |
| 2 |
58280 (9.3) |
| 3 |
57832 (9.0) |
| 4 |
57107 (10.3) |
| 5 |
53040 (9.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot