NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
2,918.5 |
| Mean read quality |
8.6 |
| Median read length |
1,835.0 |
| Median read quality |
9.0 |
| Number of reads |
176,158.0 |
| Read length N50 |
4,856.0 |
| STDEV read length |
3,265.5 |
| Total bases |
514,115,702.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
175998 (99.9%) 514.1Mb |
| >Q7 |
175626 (99.7%) 513.9Mb |
| >Q10 |
47625 (27.0%) 107.3Mb |
| >Q12 |
14844 (8.4%) 28.6Mb |
| >Q15 |
1120 (0.6%) 1.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
30.2 (16) |
| 2 |
30.1 (17) |
| 3 |
29.8 (17) |
| 4 |
28.8 (16) |
| 5 |
28.6 (17) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
108944 (9.3) |
| 2 |
72841 (9.5) |
| 3 |
64286 (8.5) |
| 4 |
60326 (9.9) |
| 5 |
54974 (10.1) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
2,918.5 |
| Mean read quality |
8.6 |
| Median read length |
1,835.0 |
| Median read quality |
9.0 |
| Number of reads |
176,156.0 |
| Read length N50 |
4,856.0 |
| STDEV read length |
3,265.5 |
| Total bases |
514,115,669.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
175996 (99.9%) 514.1Mb |
| >Q7 |
175624 (99.7%) 513.9Mb |
| >Q10 |
47623 (27.0%) 107.3Mb |
| >Q12 |
14842 (8.4%) 28.6Mb |
| >Q15 |
1118 (0.6%) 1.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.8 (17) |
| 2 |
28.8 (16) |
| 3 |
28.6 (17) |
| 4 |
28.0 (17) |
| 5 |
27.6 (17) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
108944 (9.3) |
| 2 |
72841 (9.5) |
| 3 |
64286 (8.5) |
| 4 |
60326 (9.9) |
| 5 |
54974 (10.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot